Publications

See: VIVO Profile, Google Scholar Profile, Arnetminer Profile, and DBLP

Metrics

• World's Top 2% Scientists 2020 released by Stanford University, rank 34 using career-long citation impact in the field of Information and Library Sciences.
• Top 20 most read paper of Journal of the Association for Information Science and Technology (JASIST) during 2017-2018
• Top 25% most cited PLOS Computational Biology articles in 2017
• Top 5 most downloaded articles of Journal of Informetrics in 2014
• Top 10 most accessed article in BMC Bioinformatics in 2010
• IEEE/WIC/ACM International Conference on Web Intelligence, 2010, Best Paper Finalist

Check our latest publications and preprints at Google Scholar

2020

• Xu, J., Kim, S., Song, M., Jeong, M., Kim, D., Kang, J., Rousseau, J.F., Li, X., Xu, W., Torvik, I. V., Bu, Y., Chen, C., Ebeid, I.A., Li, D., & Ding, Y. (2020) Building a PubMed Knowledge Graph, Scientific Data, 7, 205. https://doi.org/10.1038/s41597-020-0543-2
• Wanyan, T., Kang, M., Badgeley, M.A., Johnson, K.W., de Freitas, J. D., Chaudhry, F. F., Vaid, A., Zhao, S., Miotto, R., Nadkarni, G., N., Wang, F., Rousseau, J., Azad, A., Ding, Y., & Glicksberg, B.C. (2020). Heterogenous Graph Embeddings of Electronic Health Record Data Improve Critical Care Disease Predictions. The International Conference on Artificial Intelligence in Medicine (AIME 2020), August 25-28, 2020, Minneapolis, MN, USA
• Chen, C., Ebeid, I.A., Bu, Y., & Ding, Y. (2020). Coronavirus knowledge graph: A case study. International Workshop on Knowledge Graph, co-located with Twenty-Sixth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (ACM KDD 2020), August 24, 2020, San Diego, California, USA.
• Wanyan, T., Ding, Y., Azad, A., & Glicksberg, B. (2020). Coupling heterogeneous graph embeddings with convolution neural networks improves mortality prediction. International Workshop on Knowledge Graph, co-located with Twenty-Sixth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (ACM KDD 2020), August 24, 2020, San Diego, California, USA.
• Liang, G., Hou, H., Ding, Y., & Hu, Z. (2020). Knowledge recency to the birth of Nobel Prize-winning articles: Gender, Career Stage, and Country. Journal of Informetrics, 14(3), https://doi.org/10.1016/j.joi.2020.101053
• Xie, Q., Zhang, X., Ding, Y., & Song, M. (forthcoming). Monolingual and multilingual topic analysis using LDA and BERT embeddings. Journal of Informetrics.
• Li, X., Ding, Y., & Lu, W. (2020). Using Entity Metrics to Understand Drug Repurposing. American Medical Information Association Informatics Summit (AMIA 2020), March 23-26, 2020, Houston, TX, USA
• Lu, C., Zhang, Y., Ahn, Y., Ding, Y., Zhang, C., & Ma, D. (2020). Co-contributorship Network and Division of Labor in Individual Scientific Collaborations. Journal of the Association for Information Science and Technology, doi: 10.1002/asi.24321.
• Li, X., Rousseau, J.F., Ding, Y., Song, M., & Lu, W. (forthcoming). Understanding drug repurposing from the perspective of biomedical entities and their evolution: A bibliographic research using aspirin. Journal of Medical Internet Research.
• Kong, X., Zhang, J., Zhang, D., Bu, Y., Ding, Y., & Feng, X. (2020). The gene of scientific success. ACM Transactions on Knowledge Discovery from Data, 14(4),1-19. https://doi.org/10.1145/3385530
• Huang, Y., Bu, Y., Ding, Y., & Lu, W. (forthcoming). Exploring direct citations between citing publications. Journal of Information Science.
• Huang, Y., Bu, Y., Ding, Y., & Lu, W. (2020). Partitioning highly, medium, and lowly cited publications. Journal of Information Science.

2019

• Lu, C., Bu, Y., Wang, J., Ding, Y., Torvik, V., Schnaars, M., & Zhang, C. (forthcoming). Examining scientific writing styles from the perspective of linguistic complexity. Journal of the Association for Information Science and Technology
• Lu, C., Bu, Y., Dong, X., Wang, J., Ding, Y., Lariviere, V., Sugimoto, C., Paul, L., & Zhang, C. (forthcoming). Analyzing linguistic complexity and scientific impact. Journal of Informetrics.
• Liang, X., Li, D., Song, M., Madden, A., Ding, Y., & Bu, Y. (2019). Predicting biomedical relationships using the knowledge and graph embedding cascade model. PLoS One, https://doi.org/10.1371/journal.pone.0218264
• Xu, J., Ding, Y., Bu, Y., Deng, S., Yu, C., Zou, Y., & Madden, A. (2019). Interdisciplinary scholarly communication: an exploratory study for the field of joint attention. Scientometrics, https://doi.org/10.1007/s11192-019-03106-y.
• Meng, G., Huang, Y., Yu, Q., Ding, Y., Wild, D., Zhao, Y., Liu, X., & Song, M. (2019). Adopting text mining on rehabilitation therapy repositioning for stroke. Frontiers in Neuroinformatics.3, https://doi.org/10.3389/fninf.2019.00017
• Gao, Z., Fu, G., Ouyang, C., Tsutsui, S., Liu, X., & ing, Y. (2019). Edge2vec: Learning node representation using edge semantics. BMC Bioinformatics, 20:306
• Huang, Y., Bu, Y., Ding, Y., & Lu, W. (forthcoming). From zero to one: A perspective on citing. Journal of the Association for Information Science and Technology.
• Zhou, E., Li, D., Madden, A., Chen, Y., Ding, Y., Kang, Q., & Su, H. (2019). Modeling adoption behavior for innovation diffusion (full paper). iConference, March 31- April 3, 2019. Washington DC, USA.
• Li, D., Wang, Y., Madden, A., Ding, Y., Tang, J., Sun, G., Zhang, N., & Zhou, E. (2019). Analyzing Stock Market trends using Social Media User Moods and Social Influence. Journal of the Association for Information Science and Technology, 70(9), 1000-1013
• Zhang, C., Bu, Y., & Ding, Y. (2019). Does Diversity of Team Members Affect Scientific Success of a Team? A Preliminary Study (poster). iConference, Washington, DC, USA, March 31- April 3, 2019.
• Lu, C., Zhang, C., Ding, Y., Ma, D., & Zhang, Y. (2019). Understanding Roles of Collaborators from Their Byline Orders and Affiliations (poster). Proceedings of ISSI 2019, September 2-5, 2019, Rome, Italy.
• Lu, C., Zhang, C., Ding, Y., & Ma, D.. (2019). Understanding Collaborators' Byline Order from the Perspective of Cocollaboratorship Network (short paper). Proceedings of ASIST 2019, October 19-23, 2019, Melbourne, Australia.

2018

• Huang, Y., Bu, Y., Ding, Y., & Lu, W. (2018). Number verses structure: Towards citing cascades. Scientometrics, 117(3), 2177-2193.
• Lv, Y., Ding, Y., Song, M., & Duan, Z. (2018). Topology-driven trend analysis for drug discovery. Journal of Informetrics, 12(3), 893-905
• Xu, J., Bu, Y., Ding, Y., Yang, S., Zhang, H., Yu, C., & Sun, L. (2018). Understanding the formation of interdisciplinary research from the perspective of keyword evolution: a case study on joint attention. Scientometrics, 117(2), 973-995
• Min, C., Sun, J., & Ding, Y. (2018). Quantifying the evolution of citation cascades. Proceedings of the Association for Information Science and Technology, 54(1), 761-763.
• Min, C., Ding, Y., Li, J., Bu, Y., Pei, L., & Sun, J. (2018). Innovation or Imitation: The diffusion of citations. Journal of the Association for Information Science and Technology, 54(1), 761-763
• Qi, Y., Zhu, N., Zhai, Y., & Ding, Y. (2018). The mutually beneficial relationship of Patents and Scientific Literature: Topic Evolution in Nanoscience. Scientometrics, 115(2), 893-911
• Bu, Y., Ding, Y., Liang, X., & Murray, D. S. (2018). Understanding persistent scientific collaboration. Journal of the Association for Information Science and Technology, 69(3), 438-448
• An, W., & Ding, Y. (2018). The landscape of causal inference: Perspective from citation network analysis. The American Statistician.DOI: 10.1080/00031305.2017.1360794
• Bu, Y., Ding, Y., Xu, J., Liang, X., Gao, G., & Zhao, Y. (2018). Understanding Success through the Diversity of Collaborators and Milestones of Career, Journal of the Association for Information Science and Technology, 69(1), 87-97
• Chen, B. Ding, Y., & Ma, F. (2018). Semantic word shifts in a scientific domain. Scientometrics, 117(1), 211-226
• Zhai, Y., Ding, Y., Wang, F. (2018), Measuring the Diffusion of an Innovation: A Citation Analysis, Journal of the Association for Information Science and Technology,69: 368-379
• Zhang, C., Bu, Y., Ding, Y., & Xu, J.(2018), Understanding Scientific Collaboration: Homophily, Transitivity, and Preferential Attachment, Journal of the Association for Information Science and Technology, 69(1), 72-86
• Bu, Y., Murray, D. S., Xu, J., Ding, Y., Ai, P., Shen, J., & Yang, F. (2018). Analyzing scientific collaboration with "giants" based on the milestones of career. In Proceedings of the 81st Annual Meeting of the Association for Information Science and Technology (ASIS&T 2018), November 9-14, 2018, Vancouver, Canada.
• Bu, Y., Ding, Y., Murray, D. S., Huang, Y., & Zhao, Y. (2018). Measuring the stability of scientific collaboration. Scientometrics, 114(2), 463-479. (Eugene Garfield Memorial Issue).
• Lu, C., Ding, Y., Zhang, Y., Bu, Y., & Zhang, C.(2018) Types of Scientific Collaborators: A Perspective of Author Contribution Network (poster). In Proceeding of iConference 2018, March 25-28, 2018, Sheffield, UK.
• Tsutsui, S., Gao, Z., Wang, Z., Meng, G., & Ding, Y. (2018). A case study of viziometrics: What's the role of western blots in Alzheimer's Disease literature? (poster). In Proceeding of iConference 2018, March 25-28, 2018, Sheffield, UK.

2017

• Chen, B., Tsutsui S., Ding, Y., & Ma F. (2017). Understanding the topic evolution in a scientific domain: An exploratory study for the field of information retrieval. Journal of informetrics, 11(4), 1175-1189
• Zhai, Y., Ding, Y., Sun, S., & Wang, F. (2017). Multiplicity and Uncertainty: Media Coverage of Autism Causation. Journal of Informetrics, 11(3), 873-887
• Amjad, T., Ding, Y., Xu, J., Zhang, C., Daud, A., Tang, J., & Song, M. (2017), Standing on the Shoulders of Giants, Journal of Informetrics, 11(1), 307-323
• Zhou, Q., Meng, G., & Ding, Y. (2017). Who Bridge the "Valley of Death" between Basic Research and Clinical Research: In the Case of Immune-Checkpoints CTLA-4 and PD-1 Based on Inter-Citation Network (poster). ASIS&T 80th Annual Meeting (ASIS&T2017), Washington, DC, Oct 27-Nov 1, 2017.
• Zhai, Y., Wang, F., Wang, X., & Ding, Y. (2017). Machine Reading for Relationships Between Autism Research and The Media (poster). ASIS&T 80th Annual Meeting (ASIS&T2017), Washington, DC, Oct 27-Nov 1, 2017.
• Min, C., Sun, J., & Ding, Y. (2017). Quantifying the Evolution Of Citation Cascades (Poster). ASIS&T 80th Annual Meeting (ASIS&T2017), Oct. 27-Nov 1, 2017, Washington, USA.
• Lu, C., Bu, Y., Zhang C., Ding, Y., Torvik V., & Zhang, C. (2017). Does Collaboration Bring High-impact Studies? A Preliminary Study (poster). ASIS&T 80th Annual Meeting (ASIS&T2017), Washington, DC, Oct 27-Nov 1, 2017.
• Min, C., Sun, J., & Ding, Y. (2017). Imitation or Innovation: the Diffusion of Citations (poster). International Conference on Network Science (NetSci 2017), June 21-23, 2017, Indianapolis, IN., U.S.A.
• Bu, Y., Lu, C., & Ding, Y. (2017). Depicting scientific intellectual structures by keyword co-citation network analysis (Poster). International Conference on Network Science (NetSci 2017), June 21-23, 2017, Indianapolis, IN., U.S.A.
• Lu, C., Bu, Y., Ding, Y., & Zhang, C. (2017). Picturing the writing style of highly cited articles (Poster). International Conference on Network Science (NetSci 2017), June 21-23, 2017, Indianapolis, IN., U.S.A.
• Lu, C., Ding, Y., Schnaars, M., & Zhang, C. (2017). Understanding the impact change of a highly cited article: A content-based citation analysis. Scientometrics, 112(2): 927-945
• Bollen, J., Crandall,D., Junk, D., Ding, Y., & Borner, K. (2017). An efficient system to fund science: From proposal review to peer-to-peer distributions. Scientometrics, 110(1): 521-528,DOI 10.1007/s11192-016-2110-3
• Li, D., Luo, Z., Ding, Y., Tang, J., Sun, G., Dai, X., Du, J., Zhang, J., & Kong, S. (2017). User-level micro-blogging recommendation incorporating social influence. Journal of the Association for Information Science and Technology, 68(3): 553-568
• Bu, Y., Lu, C., Ding, Y., & Zhang, C. (2017). Understanding Academic Writing Style from the Perspective of Linguistic Closeness of the Speaker's Native Language to English (poster). iCnonference 2017, March 22-25, 2017, Wuhan, China.
• Wu, S., Xu, J., & Ding, Y. (2017). Discover citation topic distribution patterns of highly cited papers (poster). iCnonference 2017, March 22-25, 2017, Wuhan, China.
• Tsutsui, S., Bu, Y., & Ding, Y. (2017). Using machine reading to understand Alzheimer's and related diseases from the literature. Journal of Data and Information Science, 2(4), 81-94.
• Tsutsui, S., Meng, G., & Ding, Y. (2017). Public Machine Reading System for Alzheimer's Disease Literature (poster). iCnonference 2017, March 22-25, 2017, Wuhan, China.
• Tsutsui, S., Meng, G., Yao, X., Crandall, D., & Ding, Y. (2017). Mining Figures of Brain Images from Alzheimer's Disease Papers (poster). iCnonference 2017, March 22-25, 2017, Wuhan, China.
• Xu, J., & Ding, Y. (2017). Understanding transdisciplinary scholarly communication in the field of joint attention (poster). iCnonference 2017, March 22-25, 2017, Wuhan, China.
• Zhai, Y., Sun, S., & Ding, Y. (2017). Mining Causal knowledge from Autism Newspapers (poster). iCnonference 2017, March 22-25, 2017, Wuhan, China.
• Bu, Y., Huang, W., & Ding, Y. (2017). Topic-based Author Cocitation Analysis: A Preliminary Exploration (poster). iCnonference 2017, March 22-25, 2017, Wuhan, China.
• Chen, B., Ding, Y., & Ma, F. (2017). Mapping the semantic word shifts in topics in the field of information retrieval. 16th International Conference on Scientometrics and Informetircs, Oct 16-20, 2017, Wuhan, China

2016

• Ding, Y., & Stirling, K. (2016). Data-Driven Discovery: A new era of exploiting the literature and data.Journal of Data and Information Science, 1(4), 1-9.
• Min, C., Sun, J., Pei, L., & Ding, Y. (2016). Measuring delayed recognition for papers: Uneven weighted summation and total citations. Journal of Informetrics, 10(4), 1153-1165.
• Fu, G., Ding, Y., Seal, A., Chen, B., Sun, Y., & Bolton, E. (2016). Predicting drug protein target interactions using meta-path based semantic network analysis. BMC Bioinformatics, 17:160, DOI: 10.1186/s12859-016-1005-x.
• Xu, J., Ding, Y., Song, M., Chambers, T. (forthcoming). Author credit-assignment schemas: A comparison and analysis. Journal of the Association for Information Science and Technology, 67(8), 1973-1989.
• Tsutsui, S., & Ding, Y. (2016). Machine Reading Approach to Understand Alzheimer's Disease Literature, ACM 10th International Workshop on Data and Text Mining in Biomedical Informatics (DTMBIO), In conjunction with ACM 25th Conference on Information and Knowledge Management (CIKM), Indianapolis, USA, October 24-28, 2016
• Xu, A., Abhishek, S., Ramamurthy, A., Xu, C., Abderlraouf, M., & Ding, Y. (2016). Initial BIBFRAME 2.0 modeling for the library information spotlight "Opera Planet". Journal of Library Metadata, 16 (3-4): 202-227. doi:10.1080/19386389.2016.125891
• Dong, X., Xu, J., Ding, Y., Zhang, C., Zhang, K., & Song, M. (2016). Understanding the correlations between social attention and topic trends of scientific publications. Journal of Data and Information Science, 1(1), 28-49.
• Zhang, C., Bu, Y., & Ding, Y. (2016). Understanding scientific collaboration from the perspective of collaborators and their network structures (poster). iConference 2016 Partnership with Society, March 20-23, 2016, Philadelphia, PA, USA

2015

• Xu, J., Ding, Y., & Marlic, V. (2015). Author Credit for Transdisciplinary Collaboration. PLoS ONE, 10(9): e0137968. doi:10.1371/journal.pone.0137968
• Song, M., Heo, G., & Ding, Y. (2015). SemPathFinder: Semantic Path Analysis for Discovering Publicly Unknown Knowledge. Journal of Informetrics, 9, 686-703
• Xu, J., Ding, Y., Chen, C., & Yan, E. (2015). Hypothesis generation for joint attention analysis on autism (poster). International Conference on Scientometrics & Informetrics (ISSI 2015), June 29-July 4, 2015, Istanbul, Turkey.
• Lambrix,P., Hyvönen, E., Blomqvist, E., Presutti, V., Qi, G., Sattler, U., Ding, Y., & Ghidini, C. (2015). Knowledge Engineering and Knowledge Management - EKAW 2014 Satellite Events, VISUAL, EKM1, and ARCOE-Logic, Linköping, Sweden, November 24-28, 2014. Revised Selected Papers. Lecture Notes in Computer Science 8982, Springer 2015, ISBN 978-3-319-17965-0 (book)
• Amjad, T., Ding, Y., Daud, A., Xu, J., Malic, V. (2015). Topic-based Heterogeneous Rank. Scientometrics, 104, 313-334
• Yu, Q., Ding, Y., Song, M., Song, S., Liu, J., & Zhang, B. (2015). Tracing database usage: Detecting main paths in database link networks. Journal of Informetrics, 9(1), 1-15.
• Hu, B., Dong, X., Zhang, C., Bowman, T., Ding, Y., Yan, E., Milojevic, S., Ni., C., & Lariviere, V. (2015). A lead-lag analysis of the topic evolution patterns for preprints and publications. Journal of the Association for Information Science and Technology, 66(12), 2643-2656
• Li, D., Ding, Y., Shuai, X., Sun, G., Tang, J., Luo, Z., Zhang, J., & Chambers, T. (2015). Topic-level opinion influence model (TOIM): An investigation using tencent microblogging. Journal of the Association for Information Science and Technology, 66(12), 2657-2673.
• Tan, L., Na, J., & Ding, Y. (2015). Influence diffusion detection using the influence style (INFUSE) model. Journal of the American Society for Information Science & Technology, 66(8), 1717-1733.

2014

• Ding, Y., Song, M., Wang, X., Zhang, G., Zhai, C., & Chambers, T. (2014). Content-based citation analysis: The next generation of citation analysis. Journal of the American Society for Information Science & Technology, 65(9), 1820-1833
• Long, H., Plucker, J. A., Yu, Q., Ding, Y., Kaufman, J. C. (2014). Research productivity and performance of journals in the creativity sciences: A bibliometric analysis. Creativity Research Journal, 26(3), 353-360.
• Fang, Z., Zhou, X., Tang, J., Shao, W., Fong, A.C.M., Sun, L., Ding, Y., Zhou, L., & Luo, J. (2014). Modeling Paying Behavior in Game Social Networks. Proceedings of the Twenty-Third Conference on Information and Knowledge Management (CIKM'14), November 3-7, 2014, Shanghai, China
• Chen, B., Wang, H., Ding, Y., & Wild, D. (2014). Semantic breakthrough in drug discovery. Semantic Web Synthesis, Morgan&Claypool Publisher (book)
• Li, R., Chambers, T., Ding, Y., Zhang, G., & Meng, L. (2014). Patent citation analysis: Calculating science linkage based on citing motivation. Journal of the American Society for Information Science & Technology, 65(5), 1007-1017
• Song, M., Kim, S., Zhang, G., Ding, Y., & Chambers, T. (2014). Productivity and influence in bioinformatics: A bibliometric analysis using PubMed central. Journal of the American Society for Information Science & Technology,65(2), 352-371
• Bollen, J., Crandall, D., Junk, D., Ding, Y., & Borner, K. (2014). Collective allocation of science funding. From funding agencies to scientific agency. The EMBO Journal, 15(1), 1-3.
• Jeong, Y., Song, M., & Ding, Y. (2014). Content-based Author co-citation analysis. Journal of Informetrics, 8(1),197-211.
• Yan, E., & Ding, Y. (2014). Scholarly networks analysis. In Alhajj, R., & Rokne, J. (Eds). Encyclopedia of Social Network Analysis and Mining (ESNAM), page 1643-1651, Springer (book chapter)
• Ding, Y., Rousseau, R., & Wolfram, D. (Eds.) (2014). Measuring scholarly impact: Methods and practice. Springer. (book)
• Song, M., & Ding, Y. (2014). Topic modeling: Measuring scholarly impact through the topical lens. In Ding, Y., Rousseau, R., & Wolfram, D. (Eds.) (2014). Measuring scholarly impact: Methods and practice. Springer. (book chapter)
• Milojevi?, S., Sugimoto, C., Larivière, V., Thelwall, M., & Ding, Y. (2014). The role of handbooks in knowledge creation and diffusion: A case of science and technology studies. Journal of Informatics, 8(3), 693-709.
• Chambers, T., Milojevia, S., & Ding, Y. (2014). Female Semantic Web Researchers: Does collaboration with male researchers influence their network status? (poster). In Proceedings of the 2014 ACM Web Science Conference, June 22-26, 2014, Bloomington, IN, USA.

2013

• Ding, Y., Song, M., Han, J., Yu, Q., Yan, E., Lin, L., & Chambers, T. (2013). Entitymetrics: Measuring the impact of entities. PLoS One, 8(8): 1-14.
• Song, M., Han, N., Kim, Y., Ding, Y., & Chambers, T. (2013). Discovering implicit entity relation with the gene-citation-gene network. PLoS One, 8(12), e84639
• Yan, E., Ding, Y., & Kong, X. (2013). An informetric study of knowledge flow among scientific fields. In Proceedings of the 14th International Conference on Scientometrics and Informetrics (ISSI2013), July 15-19, 2013, Vienna, Austria.
• Ding, Y., Yan, E., Sugimoto, C., & Milojevic, S. (2013). Lead-lag topic evolution analysis: Preprints vs. paper. In Proceedings of the 14th International Conference on Scientometrics and Informetrics (ISSI2013), July 15-19, 2013, Vienna, Austria.
• Sugimoto, C., Milojevic, S., Tsou, A., & Ding, Y. (2013). Sociology-An old man's game? In Proceedings of the 14th International Conference on Scientometrics and Informetrics (ISSI2013) , July 15-19, 2013, Vienna, Austria.
• Lin, L., Xu, Z., Ding, Y., & Liu, X. (2013). Finding topic-level experts in scholarly networks. Scientometrics, 97(3), 797-819.
• Ding, Y., Liu, X., Guo, C., & Cronin, B. (2013). The distribution of references across texts: Some implications for citation analysis. Journal of Informetrics, 7(30), 583-592
• Yan, E., Ding, Y., Cronin, B., & Leydesdorff, L. (2013). A bird's-eye view of scientific trading: Dependency relations among fields of science. Journal of Informetrics, 7(2), 249-264.
• Ding, Y., Yan, E., Ghazinejad, A., & Han, J. (2013). Extending the VIVO ontology to iSchools: Enabling networking of information scientists (poster). iConference: Scholarship in action: Data, Innovation and Wisdom, February 12-15, 2013, Fort Worth, TX, USA
• He, B., Ding, Y., Tang, J., Reguramalingam, V., & Bollen, J. (2013). Mining diversity subgraph in multidisciplinary scientific collaboration networks: A meso perspective. Journal of Informetrics, 7(1), 117-128
• Zhang, G., Ding, Y., & Milojevic, S. (2013). Citation content analysis (CCA): A method for syntactic and semantic analysis of citation content. Journal of the American Society for Information Science & Technology, 64(7), 1490-1503
• Ni, C., Shaw, D., Lind, S. M., & Ding, Y. (2013). Journal impact and proximity: An assessment using bibliographic features. Journal of the American Society for Information Science and Technology, 64(4), 802-817.
• Butenko, S., Duhon, R., Ding, Y., Shahinpour, S., & Jacob, E. (2013). Social tagging networks: Cohesiveness and dynamics. The Industrial and Systems Engineering Research Conference (ISERC2013), May 18-22, 2013, San Juan, Puerto Rico.
• Jatowt, A., Lim, E.P., Ding, Y., Miura, A., Tezuka, T., Dias, G., Tanaka, K., Flanagin, A. J., & Dai, B. T. (Eds.) (2013). Social Informatics: Proceedings of the 5th International Conference (SocInfo 2013), Lecture Notes in Computer Science 8238, Springer, ISBN 978-3-319-03259-7 (Book) (http://link.springer.com/book/10.1007%2F978-3-319-03260-3)
• Liu, X., Chen, M., Ding, Y., & Song, M. (2013). Workshop summary for the 2013 international workshop on mining unstructured big data using natural language processing. Proceedings of the ACM Conference of Information and Knowledge Management (CIKM 2013), p2547-2548.
• Kim, W., Ding, Y., & Kim, H. G. (Eds.) (2013). Semantic Web: Proceedings of the 3rd Joint International Semantic Technology Conference (JIST). Lecture Notes in Computer Science 8388, Springer (Book)
• Milojevic, S., Sugimoto, C., Lariviere, V., Thelwall, M., & Ding, Y. (2013). The role of handbooks in the knowledge creation and diffusion: A case of science studies. , Montreal, Canada, Nov 2, 2013.
• Chambers, T., Shah, S., Urankar, A., Kalyan, V., Scharnhorst, A., Reijnhoudt, L., Rideour, L., Gueret, C., & Ding, Y. (2013). A bilingual VIVO instance: Using both Dutch and English to model researchers at Free University of Amsterdam. The VIVO Conference 2013, August 14-16, St. Louis, USA.
• Lin, L., Xu, Z., & Ding, Y. (2013). OWL Ontology Extraction from Relational Databases via Database Reverse Engineering. Journal of Software, 8(10), 2749-2760.

2012

• Shuai, X., Ding, Y., Busemeyer, J., Chen, S., Sun, Y., & Tang, J. (2012). More spreaders but less influence: An analysis of indirect influence on Twitter. Journal of Semantic Web and Information Systems, 8(4), 20-36.
• Ding, Y., Anyanwu, K., Tang, J., & Yu, P. (2012). Guest editorial preface: Special issue on mining associations and patterns from the Semantic Data. Journal of Semantic Web and Information Systems, 8(4), 1-2.
• Tao, C., Zhu, Q., Ding, Y., & Chute, C. (2012). Time-related patient data retrieval for the case studies from the pharmacogenomics research network. Journal of Medical Systems, 36(Suppl 1), 37-42.
• Yan, E., Ding, Y., & Kong, X. (2012). Monitoring knowledge flow through scholarly networks (poster). The 75th Annual Conference of the American Society for Information Science and Technology (ASIS&T2012), Baltimore, Maryland, October 26-30, 2012.
• Zhang, G., & Ding, Y. (2012). Scholarly conformity: Origins, framework, applications and implications (poster). ASIS&T 75th Annual Meeting (ASIS&T2012), Baltimore, Maryland, October 26-30, 2012.
• Borner, K., Conlon, M., Corson-Rikert, J., & Ding, Y. (eds) (2012). VIVO: A Semantic Approach to Scholarly Networking and Discovery. Synthesis Lectures on the Semantic Web: Theory and Technology. Morgan & Claypool Publisher (Book).
• Yang, Y., Tang, J., Keomany, J., Zhan, Y., Ding, Y., Li, J., & Wang, L. (2012). Mining competitive relationships by learning across heterogeneous networks. The 21st ACM Conference on Information and Knowledge Management (CIKM2012) (full paper, accept rate: 13.4%), October 29- Novermer 2, 2012, Hawaii, USA.
• Li, D., Shuai, X., Sun, G., Tang, J., Ding, Y., & Luo, Z. (2012). Mining topic-level opinion influence for micro-blogging. The 21st ACM Conference on Information and Knowledge Management (CIKM2012) (short paper, accept rate: 14.3%), October 29- Novermer 2, 2012, Hawaii, USA.
• Kong, X., Yu, P., Ding, Y., & Wild, D. (2012). Meta Path-based classification on heterogeneous information networks. The 21st ACM Conference on Information and Knowledge Management (CIKM2012) (short paper, accept rate: 14.3%), October 29- Novermer 2, 2012, Hawaii, USA.
• Chen, B., Ding, Y., & Wild, D. (2012). Assessing Drug Target Association using Semantic Linked Data. PLoS Computational Biology, 8(7): e1002574. doi:10.1371/journal.pcbi.1002574
• Chen, B., Ding, Y., & Wild, D. J. (2012). Improving integrative searching of systems chemical biology data using semantic annotation. Journal of Cheminformatics, 4:6 (doi:10.1186/1758-2946-4-6).
• Holmes, K., Conlon, M., & Ding, Y. (2012). Enhanced collaboration and research discovery through VIVO (poster). AMIA 2012 Joint Summit on Translational Science, March 19-23, San Francisco, CA, USA.
• Wang, H., Sun, Y., Wild, D. J., Ding, Y., Tang, J., & Gifford, E. (2012). PharmNet: A web-based tool for discovering novel relationships between pharmaceutically relevant entities (poster). Molecular Med Tri-Conference, February 19-23, 2012, San Francisco, CA, USA.
• Shuai, X., Ding, Y., & Busemeyer, J. (2012). How can spreaders affect the indirect influence on Twitter? (poster). ACM/IEEE Joint Conference on Digital Libraries (JCDL2012), June 10-14, 2012, Washington DC, USA
• Shuai, X., Ding, Y., Busemeyer, J. (2012). Multiple spreaders affect the indirect influence on Twitter (poster, accept ratio: 28.1%). The World Wide Web Conference (WWW2012), April 16-20, 2012, Lyon, France.
• Yan, E., & Ding, Y.(2012). Scholarly network similarities: How bibliographic coupling networks, citation networks, co-citation networks, topical networks, coauthorship networks, and co-word networks related to each other. Journal of the American Society for Information Science and Technology, 63(7), 1313-1326.
• He, B., Ding, Y., Yan, E. (2012). Mining patterns of author orders in scientific publications. Journal of Informetrics, 6(3), 359-367
• Wild, D. J., Ding, Y., Sheth, A. P., Harland, L., Gifford, E. M., & Lajiness, M. S. (2012). System chemical biology and the Semantic Web: What they mean for the future of drug discovery research. Drug Discovery Today (impact factor=6.422), 17(9-10), 469-474.
• Ding, Y., Chen, B., Yu, P., Gifford, E., & Wild, D. (2012). Chem2Bio2RDF: Linked open data for drug discovery (poster). Conference on Semantics in Healthcare and Life Sciences (CSHALS2012), February 22-24, 2012. Boston, MA, USA.
• Ding, Y., Mitchell, S., Corson-Rikert, J., Lowe, B., He, B., & the VIVO ontology team (2012). The VIVO ontology: Enabling Networking of Scientists (poster). Conference on Semantics in Healthcare and Life Sciences (CSHALS2012), February 22-24, 2012. Boston, MA, USA.
• Mitchell, S., Lowe, B., Corson-Rikert, J., Ding, Y., He, B., Chen, S., Ahmed, M., Rejack, N., Parkes, P., & the VIVO Collaboration (2012). The VIVO ontology: Enabling networking of scientists (Poster). AMIA 2012 Joint Summits on Translational Science, March 19-23, 2012, San Francisco, CA, USA.
• Li, D., Ding, Y., Shuai, X., Bollen, J., Tang, J., Chen, S., Zhu, J., & Rocha, G. (2012). Adding community and dynamic to topic models. Journal of Informetrics, 6(2), 237-253.
• Yan, E., Ding, Y., Milojevic, S., & Sugimoto, C. R. (2012). Topics in dynamic research communities: An exploratory study for the field of information retrieval. Journal of Informetrics, 6(1), 140-153.
• Yan, E., Ding, Y., & Jacob, E. (2012). Overlaying communities and topics: An analysis on publication networks. Scientometrics, 90(2), 499-513.
• Ding, Y. (2012). Information Concepts, Retrieval, and Services [series]. Gary Marchionini (Ed.). San Rafael, CA: Morgan & Claypool. (ISSN: 1947-945X [print] 1947-9468 [electronic]) (book review). Journal of the American Society for Information Science and Technology, 63(2), 421-424.
• Lin, N., Li, D, Ding, Y., He, B., Qin, Z., Tang, J. Li, J. & Dong, T. (2012). Dynamic features of Delicious, Flickr and YouTube, Journal of the American Society for Information Science and Technology, 63(1), 139-162.

2011

• He, B., Tang, J., Ding, Y., Wang, H., Sun, Y., Shin, J., Chen, B., Moorthy, G., Qiu, J., Desai, P., & Wild, D. (2011). Mining relational paths in integrated biomedical data. PLoS One.
• Zhu, Q., Sun, Y., Challa, S., Ding, Y., Lajiness, M.S., & Wild, D. J. (2011), Semantic Inference using Chemogenomics Data for Drug Discovery, BMC Bioinformatics, 12, 256.
• He, B., Ding, Y., & Ni, C. (2011). Mining enriched contextual information of scientific collaboration: A meso perspective. Journal of the American Society for Information Science and Technology, 62(5), 831-845.
• Wang, H., Ding, Y., Tang, J., Dong, X., He, B., Qiu, J., & Wild, D. (2011). Finding complex biological relationships in recent PubMed articles using Bio-LDA. PloS One
• Ding, Y. (2011). Community Detection: Topological vs. Topical. Journal of Informetrics, 5, 498-514.
• Ding, Y. (2011). Scientific collaboration and endorsement: Network analysis of coauthorship and citation networks. Journal of Informetrics, 5(1), 187-203
• Ding, Y. (2011). Topic-based PageRank on author co-citation networks. Journal of the American Society for Information Science and Technology, 62(3), 449-466
• Ding, Y. (2011). Applying weighted PageRank to author citation networks. Journal of the American Society for Information Science and Technology, 62(2),236-245
• Yan, E., Ding, Y., & Sugimoto, C. (2011). P-Rank: An indicator measuring prestige in heterogeneous scholarly networks. Journal of the American Society for Information Science and Technology.
• Ding, Y., & Cronin, B. (2011). Popular and/or Prestigious? Measures of Scholarly Esteem, Information Processing and Management, 47(1), 80-96. (DOI:10.1016/j.ipm.2010.01.002).
• Yan, E., & Ding, Y. (2011). Discovering author impact: A PageRank perspectives. Information Processing and Management, 47(1), 125-134.
• Li, D., Ding, Y., Sugimoto, C., He, B., Tang, J., Yan, E., Lin, N., Qin, Z. & Dong, T. (2011). Modeling Topic and Community Structure in Social Tagging: the TTR-LDA-Community Model. Journal of the American Society for Information Science and Technology, 62(9), 1849-1866.
• Yan, E., Ding, Y., & Jacob, E. K. (2011). Knowledge discovery in research communities: Matching publication clusters on shared author and word relations. Proceedings of the 13th International Conference on Scientometrics and Informetrics (ISSI), July 4-8, 2011, Durban, South Africa.
• Yan, E., & Ding, Y. (2011). The effects of dangling nodes on citation networks. Proceedings of the 13th International Conference on Scientometrics and Informetrics (ISSI), July 4-8, 2011, Durban, South Africa
• Milojevic, S., Sugimoto, C., Yan, E., & Ding, Y. (2011). The cognitive structure of library and information science. Journal of the American Society for Information Science and Technology, 62(10), 1933-1953.
• Sugimoto, C. R., Li, D., Russell, T., Finlay, S., & Ding, Y. (2011). The shifting sands of disciplinary development: Analyzing Library and Information Science (LIS) dissertations. Journal of the American Society for Information Science and Technology, 62(1), 185-204.
• Toma, I., Caverlee, J., Ding, Y., Jacob, E. K., Yan, E., & Milojevi?, S. (2011). Social networks and semantics, In Papadopoulou, P., Kanellis, P., & Martakos, D. (Eds.). Social Computing Theory and Practices: Interdisciplinary Approaches. pp: 155-196. IGI Global Publisher (ISBN: 9781616929049)

2010

• Zhu, Q., Lajiness, M. S., Ding, Y., & Wild, D. (2010). WENDI: A tool for finding non-obvious relationships between compounds and biological properties, genes, diseases and scholarly publications. Journal of Cheminformatics.
• He, B., Ding, Y., Milojevic, S., & Jacob, E. (2010). A comparative analysis of user-generated and author-generated metadata for web resources (Poster). Annual Meetings of the American Society for Information Science and Technology (ASIST 2010), Pittsburgh, Pennsylvania, Oct 22-27, 2010.
• Li, D., He, B., Ding, Y., Tang, J., Sugimoto, C., Qin, Z., Yan, E., & Li, J. (2010). Community-based topic modeling for social tagging. The 19th ACM International Conference on Information and Knowledge Management (CIKM2010), Oct 26-30, 2010, Toronto, Canada
• Ni, C. & Ding, Y. (2010). Journal clustering through interlocking editorship information. Annual Meetings of the American Society for Information Science and Technology (ASIST 2010), Pittsburgh, Pennsylvania, Oct 22-27, 2010.
• Yan, E., & Ding, Y. (2010). Measuring scholarly impact in heterogeneous networks. Annual Meetings of the American Society for Information Science and Technology (ASIST 2010), Pittsburgh, Pennsylvania, Oct 22-27, 2010.
• Ding, Y., Sun, Y., Chen, B., Borner, K., Ding, L., Wild, D., Wu, M., DiFranzo, D., Fuenzalida, A. G., Li, D., Milojevic, S., Chen, S., Sankaranarayanan, M. & Toma, I. (2010). Semantic Web Portal: A Platform for Better Browsing and Visualizing Semantic Data. Proceedings of the 2010 International Conference On Active Media Technology (AMT2010), Lecture Notes in Artificial Intelligence (LNAI), Springer, Aug 28-30, Toronto, Canada.
• Chen, B., Ding, Y., Wang, H., Wild, D., Dong, X., Sun, Y., Zhu, Q., & Sankaranarayanan, M. (2010). Chem2Bio2RDF: A Linked Open Data Portal for Chemical Biology. The 2010 IEEE/WIC/ACM International Conferences on Web Intelligence, Aug 31 - Sep 3, 2010, Toronto, Canada.(Best Paper Shortlist)
• Daud, A., Li, J., Zhou, L., Zhang, L. & Ding, Y. (2010). Modelling ontology of folksonomy with tags latent semantics. The 2010 IEEE/WIC/ACM International Conference on Web Intelligence, Aug 31-Sep 3, Toronto, Canada.
• Zhu, Q., Challa, S., Purohit, P., Lajiness, M., Wild, D., & Ding, Y. (2010). Using web technologies for integrative drug discovery. The 2010 IEEE/WIC/ACM International Conference on Web Intelligence, Aug 31-Sep 3, Toronto, Canada
• Singhi, M., & Ding, Y. (2010). MuzkMesh: Interlinking semantic music data. The 2010 IEEE/WIC/ACM International Conference on Web Intelligence, Aug 31-Sep 3, Toronto, Canada
• Li, D., Ding, Y., Qin, Z., Milojevic, S., He, B., Dong, T. & Yan, E. (2010). Dynamic features of social tagging vocabulary: Delicious, Flickr and YouTube. The 2010 International Conference on Advances in Social Network Analysis and Mining (ASONAM2010), Odense, Denmark, 9-11 Aug, 2010.
• Yan, E. and Ding, Y. (2010). Weighted citation: An indicator of an article's prestige. Journal of the American Society for Information Science and Technology, 61(8), 1635-1643.
• Dong, X., Ding, Y., Wang, H., Chen, B. and Wild, D. (2010). Chem2Bio2RDF Dashboard: Ranking semantic associations in systems chemical biology space. Workshop of the Future of the Web for collaborative science, The 19th World Wide Web Conference, April 26-30, Raleigh, NC, USA.
• Ding, Y. (2010). Semantic Web: Who is Who in the field, Journal of Information Science. (doi:10.1177/0165551510365295)
• Chen, B., Dong, X., Jiao, Dazhi, Wang, H., Zhu, Q., Ding, Y. and Wild, D. (2010). Chem2Bio2RDF: A semantic framework for linking and mining chemogenomic and systems chemical biology data. BMC Bioinformatics, 2010, 11, 255.
• Toma, I., Caverlee, J., Ding, Y., Jacob, E. Yan, E., & Milojevic, S. (2010 forthcoming). Social Networks and Semantics, In Handbook of Research on Social Computing Theory and Practices: Interdisciplinary Approaches.
• Ding, Y., Jacob, E., Fried, M., Toma, I., Yan, E., Foo, S., & Milojevic, S. (2010). Upper Tag Ontology (UTO) for integrating social tagging data. Journal of the American Society for Information Science and Technology, 61(3), 505-521.
• Yan, E., Ding, Y., & Zhu, Q. (2010). Mapping Library and Information Science in China: A Coauthorship Network Analysis. Scientometrics, 83(1): 115-131.

2009

• Gomez-Perez, A., Yong, Y., & Ding, Y. (2009) (Eds). The Semantic Web - Proceeding of the Fourth Asian Semantic Web Conference. Lecture Notes in Computer Sciences, Vol. 5926. Springer.(ISBN: 978-3-642-10870-9)
• Ding, Y., Konidena, D., Sun, Y., & Chen, S. (2009). Semantic citation. Poster/Demo at the Asian Semantic Web Conference, Dec 6-9, Shanghai, China.
• Singhi, M., & Ding, Y. (2009). Linking US Patent Data with DBpedia. Poster/Demo at the Asian Semantic Web Conference, Dec 6-9, Shanghai, China.
• Challa, S., Wild, D., Ding Y., & Zhu Q. (2009). Semantic rules on drug discovery data. Poster/Demo at the Asian Semantic Web Conference, Dec 6-9, Shanghai, China.
• Zhang, Z., Ding, Y. and Hong, N. (2009). Semantic-powered research profiling. Poster and Demo at the International Semantic Web Conference, Oct 25-28, 2009, Washington DC, USA
• Ding, Y., Jacob, E., Zhang, Z., Foo, S., Yan, E., George, N. and Guo, L. (2009). Perspectives on social tagging. Journal of the American Society for Information Science and Technology, 60(12): 2388-2401
• Ding, Y., Yan, E., Frazho, A. and Caverlee, J. (2009). PageRank for ranking authors in co-citation networks. Journal of the American Society for Information Science and Technology, 60(11), 2229-2243.
• Yan, E. & Ding, Y. (2009). Applying centrality measures to impact analysis: A coauthorship network analysis. Journal of the American Society for Information Science and Technology, 60(10), 2107-2118.
• Yan, E. & Ding, Y. (2009). The use of centrality measures in scientific evaluation: A coauthorship network analysis. In Proceedings of the 12th International Conference on Scientometrics and Informetrics, July 14-17, Rio de Janeiro, Brazil.
• Kashoob, S., Caverlee, J. and Ding, Y. (2009). A Categorical Model for Discovering Latent Structure in Social Annotations. In Proceedings of the Third International AAAI Conference on Weblogs and Social Media (ICWSM2009). May 17-20, 2009, San Jose, California, USA.
• Ding, Y., Jacob, E., Caverlee, J., Fried, M. and Zhang, Z. (2009). Profiling Social Networks: A Social Tagging Perspective. D-Lib, March/April, 2009.
• Toma, I., Ding, Y., Chalermsook, K., Simperl, E., Fensel, D. (2009). Utilizing Web 2.0 in Web Service Ranking. In Proceedings of the 3rd International Conference on Digital Society (ICDS'09), Cancun, Mexico, February 1-7, 2009.
• Hofmann, M., and Ding, Y. (2009). CitationBase: A Social Tagging Management Portal for References. Poster at WebSci2009: Society On-Line, Athens, Greece, March 18-20, 2009.

2008

• Ding, Y., Toma, I., Kang, S., Zhang, Z. and Fried, M. (2008). Mediating and Analyzing Social Data. Proceedings of The 7th International Conference on Ontologies, Databases, and Applications of Semantics (ODBASE 2008), Lecture Notes in Computer Sciences, Nov 11-13, 2008, Monterrey, Mexico, Springer-Verlag.
• Ding, Y., Kang, S., Toma, I., Fried, M. and Yan, Z. (2008). Integrating Social Tagging Data. In Proceedings of the 2008 IEEE International Conference on Systems, Man and Cybernetics, 12-15 October 2008, Singapore.
• Ding, Y., Herzog, C., Luger, M., Prantner, K., and Yan, Z. (2008). OnTourism: Semantic eTourism Portal. In Proceedings of 2nd International Scientific Conference of the e-Business Forum - E-Business in Travel, Tourism and Hospitality, March 14th, 2008, Athens, Greece.
• Garcia, J. M., Toma, I., Ruiz, D., Ruiz-Cortes, A., Ding, Y. and Gomez, J. M. (2008). Ranking Semantic Web Services Using Rules Evaluation and Constraint Programming. The Fourth Scientific Technical Symposium on Web Services and SOA (JSWEB2008), Oct 29-30, 2008. Seville, Spain.
• Ding, Y., Toma, I., Kang, S., Fried, M. and Yan, Z. (2008). Data Mediation and Interoperation in Social Web: Modeling, Crawling and Integrating Social Tagging Data. WWW2008 Workshop on Social Web Search and Mining (SWSM2008), 17th International World Wide Web Conference, April 21-25, 2008, Beijing, China.

2007

• Prantner, K., Ding, Y., Luger, M., Yan, Z. and Herzog, C. (2007): Tourism Ontology and Semantic Management System: State-of-the-arts Analysis. IADIS International Conference WWW/Internet 2007, Vila Real, Portugal, 5-8 Oct 2007.
• Fensel, D., Krummenacher, R., Shafiq, O., Kuehn, E., Riemer, J., Ding, Y. and Draxler, B. (2007). TSC - Triple Space Computing. Special Issue on ICT research in Austria. Journal of Electronics & Information Technology, Jan/Feb, 31-38.
• Yan, Z. and Ding, Y. (2007). Towards a Domain Oriented and Independent Semantic Search Model. In Proceedings of the 11th International Conference on Knowledge-Based and Intelligent Information and Engineering Systems (KES2007), Vietri sul Mare, Italy, September 2007, Springer.
• Yan, Z., Scharffe, F. and Ding, Y. (2007). Semantic Search on Cross-Media Cultural Archives . In Proceedings of the 5th Atlantic Web Intelligence Conference (AWIC2007), page: 220-225, Fontainebleau, France, June 2007, Springer
• Ding, Y. H., Ding, Y., Embley, D., Shafiq, O. and Hepp, M. (2007). Making the Semantic Web a Reality through Active Semantic Space . ESWC 2007 workshop on Bridging the Gap between Semantic Web and Web 2.0, European Semantic Web Conference 2007, June 1-4, Innsbruck, Austria.
• Luger, M., Ding, Y., Scharffe, F., Duan, R. and Yan, Z. (2007). EASAIER Semantic Music Retrieval Portal. Poster at the 2nd International Conference on Semantics And Digital Media Technologies (SAMT), Genova, Italy, Dec 5-7, 2007.
• Luger, M., Ding, Y., Yan, Z., Scharffe, F., Duan, Y., Raimond, Y., Barthelemy, L. and Reiss, J. (2007). EASAIER: Semantic Music Retrieval Portal. Poster and Demo at the 6th International Semantic Web Conference (ISWC2007), Nov 11-15, 2007, Busan, Korea.
• Scharffe, F., Ding, Y. and Fensel, D. (2007). Towards Correspondence Patterns for Ontology Mediation. Poster at Ontology Matching Workshop, the Sixth International Semantic Web Conference (ISWC2007), Busan, Korea, Nov 11-15, 2007.
• Scharffe, F., Raimond, Y., Barthelemy, L., Ding, Y. and Luger, M. (2007). Publishing and Accessing Digital Archives using the EASAIER Framework. Poster and Demo at Workshop on cultural heritage and the semantic web, the Sixth International Semantic Web Conference (ISWC2007), Busan, Korea, Nov 11-15, 2007.
• Yan, Z., Cimpian, E., Zaremba, M., Ding, Y. (2007). Business Process Modeling Ontology. Poster and Demo at the 6th International Semantic Web Conference (ISWC2007), Nov 11-15, 2007, Busan, Korea.

2006

• Shafig, O., Sharffe, F., Krummenacher, R., Ding, Y. and Fensel, D. (2006). Data Mediation Support for Triple Space Computing . In Proceedings of the 2nd IEEE International Conference on Collaborative Computing (CollaborateCom 2006), 17-20, November 2006, Atlanta, GA, USA.
• Ding, Y., Scharffe, F., Harth, A. and Hogan, A. (2006). AuthorRank: Ranking Improvement for the Web . In Proceedings of the 2006 International Conference on Semantic Web and Web Services (SWWS06), June 26-29, 2006, Las Vegas, USA.
• Riemer, J., Martin-Recuerda, F., Ding, Y., Murth, M., Sapkota, B., Krummenacher, R., Shafiq, O., Fensel, D. and Kuehn, E. (2006). Triple Space Computing: Adding Semantics to Space-based Computing. In Proceedings of the First Asian Semantic Web Conference (ASWC2006), Lecture Notes in Computer Science (LNCS), page: 300-306, Berlin: Springer Verlag. Sept 3-7, 2006, Beijing, China.
• Shafiq, O., Ding, Y. and Fensel, D. (2006). Bridging Multi Agent Systems and Web Services: Towards Interoperability Between Software Agents and Semantic Web Services. In Proceedings of 10th IEEE International Enterprise Computing Conference (EDOC 2006), page: 85-96, 16-20 October 2006, Hong Kong, China.
• Ding, Y. H., Embley, D., Ding, Y. and Shafig, O. (2006). Avoiding Deceptive Annotations in the Semantic Web . In 1st Semantic Authoring and Annotation Workshop at the Fifth International Semantic Web Conference (ISWC2006), Nov 5-9, Athens, GA, USA.
• Shafiq, O., Krummenacher, R., Martin-Recuerda, F., Ding, Y. and Fensel, D. (2006). Triple Space Computing Middleware for Semantic Web Services. In 2006 Middleware for Web Services (MWS2006), Workshop at 10th IEEE International Enterprise Computing Conference (EDOC 2006), 16-20 Oct. 2006, Hong Kong, China.
• Krummenacher, R., Martin-Recuerda, F., Murth, M., Riemer, J., Ding, Y. and Fensel, D. (2006). Triple Space Computing: New Communication Paradigm for Web Services. Poster at the 3rd European Semantic Web Conference 2006, June 11-14, 2006, Budva, Montenegro.

2005

• Lausen, H., Ding, Y., Stollberg, M., Fensel, D., Lara, R. and Han, S. (2005). Semantic Web Portals - State of the Art Survey. Journal of Knowledge Management, 9(5): 40-49.
• Ding, Y. and Fensel, D. (2005). Semantic Web Powered Portal Infrastructure. In The 9th International Symposium on Social Communication, Santiago de Cuba, Cuba, Jan 24-28, 2005.

2004

• Ding, Y., Fensel, D., Lara, R., Lausen, H., Stollberg, M. and Han, S. (ed.) (2004). Proceedings of the ECAI 2004 Workshop on Application of Semantic Web Technologies to Web Communities, CEUR, ISSN 1613-0073, Vol-107, 2004.
• Arroyo, S., Lara, R., Gomez, J., Berka, D., Ding, Y. and Fensel, D. (2004). Semantic Aspects of Web Services (book chapter). In M. Singh (ed.) Practical Handbook of Internet Computing. Chapman Hall and CRC Press, Baton Rouge.
• Arroyo, S., Ding, Y. Stollberg, M. and Fensel, D. (2004). Semantic Web Languages. Strengths and Weakness. In Proceedings of International Conference in Applied Computing (IADIS04), Lisbon, Portugal, 23-26 March 2004.
• Lara, R., Han, S., Lausen, H., Stollberg, M., Ding, Y. and Fensel, D. (2004). An Evaluation of Semantic Web Portals . In Proceedings of the IADIS Applied Computing International Conference 2004, Lisbon, Portugal, March 23-26, 2004.
• Stollberg, M., Lausen, H.,Lara, R., Ding, Y., Han, S. and Fensel, D. (2004). Towards Semantic Web Portals. In C. Bussler, S. Decker, D. Schwabe and O. Pastor (eds). Application Design, Development and Implementation Issues in the Semantic Web, Proceedings of the WWW2004 Workshop on Application Design, Development and Implementation Issues in the Semantic Web, New York, NY, USA, May 18, 2004. CEUR Workshop Proceedings, ISSN 1613-0073.

2003

• Sure, Y., Akkermans, H., Broekstra, J., Davies, J., Ding, Y., Duke, A., Engels, R., Fensel, D., Horrocks, I., Iosif, V., Kampman, A., Kiryakov, A., Klein, M., Lau, T., Ognyanov, D., Reimer, U., Simov, K., Studer, R.,van der Meer, J. and van Harmelen, F. (2003). On-To-Knowledge: Semantic Web Enabled Knowledge Management (book chapter), In N. Zhong, J. Liu and Y. Yao (eds.), Web Intelligence. page: 277-300, Springer.
• Ding, Y.,Fensel, D., Klein, M., Omelayenko, B. and Schulten, E. (2003). The role of ontologies in eCommerce (book chapter). In S.Stab and R. Studer (eds.) Handbook on Ontologies, page: 593-616, Springer.
• Fensel, D., van Harmelen, F. and Ding, Y. (2003). On-To-Knowledge in a Nutshell. Special Issue of IEEE Computer on Web Intelligence (WI).
• Ding,Y., Fensel, D. and Stork, H. (2003). The Semantic Web: From Concept to Percept. Austrian Artificial Intelligence Journal, 21 (4): 4-18.
• Ding, Y. and Fensel, D. (2003). GoldenBullet: The Prototype of Automatic Classification of Product Descriptions. In The 8th International Symposium on Social Communication, Santiago de Cuba, Cuba, Jan, 2003.
• Benjamins, R., Contreras, J., Perez,A., Uszkoreit, H., Declerck, T., Fensel, D., Ding, Y., Wooldridge, M. and Tamma, V. (2003). Esperonto application: Service provision of semantic annotation, aggregation, indexing and rerouting of textual, multimedia, and multilingual web content. In Proceedings of 4th European Workshop on Image Analysis for Multimedia Interactive Services (WIAMIS 2003), April 9-11, London, UK.
• Ding, Y., van Rijsbergen, J., Ounis, I., Jose, J. (2003). Report on ACM SIGIR workshop on Semantic Web SWIR 2003, SIGIR Forum 37(2): 45-49.
• Lausen, H., Stollberg, M., Lara, R., Ding, Y., Han, S. and Fensel, D. (2003). Semantic Web Portals - State of the Art Survey. Technical Report, DERI-Innsbruck.
• Ding, Y. and Fensel, D. (2003). Semantic Web: The Next Generation Web - Guest Editor Introduction. Austrian Artificial Intelligence Journal, 21(4): 1-3.
• Ding, Y., Fensel, D.and Stork, Hans-Georg (2003). Semantic web enabled web services - Guest Editor Introduction. Austrian Artificial Intelligence Journal, 21(5): 1-4.

2002

• Fensel, D., Omelayenko, B., Ding, Y., Schulten, E., Botquin, G., Brown, M. and Flett, A. (2002): Intelligent Information Integration in B2B Electronic Commerce. Springer.
• Klein, M., Ding, Y., Fensel, D. and Omelayenko, B. (2002). Ontology Management: Storing, Aligning and Maintaining ontologies (book chapter). In J. Davis, D. Fensel and F. van Harmelen (eds.) Towards the Semantic Web: Ontology-driven knowledge management, page: 47-69, John Wiley and Sons Ltd.
• Omelayenko, B., Crubezy, M., Fensel, D., Benjamins, R., Wielinga, B., Motta, E., Musen, M. and Ding, Y. (2002). UPML: The Language and Tool Support for Making the Semantic Web Alive (book chapter). In D. Fensel et al. (eds.), Spinning the Semantic Web, page: 141-170, MIT Press, Boston, ISBN 0262062321.
• Ding, Y., Fensel, D., Klein, M. and Omelayenko, B. (2002). The Semantic Web: Yet Another Hip? Data and Knowledge Engineering, 41(3):205-227.
• Ding, Y. and Foo, S. (2002). Ontology Research and Development: Part 1 - A Review of Ontology Generation. Journal of Information Science, 28(2): 123-136.
• Ding, Y. and Foo, S. (2002). Ontology Research and Development: Part 2 - A Review of Ontology Mapping and Evolving. Journal of Information Science, 28(5): 383-396.
• Ding, Y., Korotkiy, M., Omelayenko, B., Kartseva, V., Zykov, V., Klein, M., Schulten, E. and Fensel, D. (2002). GoldenBullet: Automated Classification of Product Data in E-commerce . In: Proceedings of 5th International Conference on Business Information Systems (BIS-2002), Pozna, Poland, April 24-25, 2002.
• Ding, Y., Korotkiy, M., Omelayenko, B., Kartseva, V., Zykov, V., Klein, M., Schulten, E. and Fensel, D. (2002). GoldenBullet in a Nutshell. In Proceeding of the 15th International FLAIRS Conference (FLAIRS-2002), page: 403-407, Beachside Resort and Conference Center, Pensacola Beach, May 14-16, 2002, Florida, USA.
• Fensel, D., Bussler, C., Ding, Y., Kartseva, V.,Klein, M.,Korotkiy, M.,Omelayenko, B. and Siebes, R. (2002). Semantic Web Application Areas . In Proceedings of the 7th International Workshop on Applications of Natural Language to Information Systems (NLDB2002), Stockholm - Sweden, June 27-28, 2002.

2001

• Ding, Y. (2001). A Review of Ontologies with the Semantic Web in View. Journal of Information Science, 27(6): 377-384.
• Ding, Y., Chowdhury, G. and Foo, S. (2001). Bibliometric Cartography of Information Retrieval Research by Using Co-word Analysis. Information Processing & Management, 37(6): 817-842.
• Fensel, D., Ding, Y., Schulten, E., Omelayenko, B., Botquin, G., Brown, M. and Flett, A.(2001). Product Data Integration in B2B E-commerce. IEEE Intelligent Systems, 16(4): 54-59.
• Ding, Y. (2001). IR and AI: The Role of Ontology. In Proc. 4th International Conference of Asian Digital Libraries (ICADL'01), Dec 10-12, 2001, Bangalore, India.
• Ding, Y. and Fensel, D. (2001). Ontology Library Systems: The key for Successful Ontology Reuse. In I. Cruz, S. Decker, J. Euzenat and D. McGuinness (eds). Proceedings of SWWS'01, The First Semantic Web Working Symposium, page: 93-112, Stanford University, California, USA, July 29th-August 1st, 2001
• Ding, Y. and Engels, R. (2001). IR and AI: Using co-occurrence theory to generate lightweight ontologies. In Workshop on Digital Libraries (Dlib2001), 12th International Conference on Database and Expert Systems Applications (DEXA2001), page: 961-965, Munich, Germany, Sep 3-7, 2001.
• Ding, Y. and Fensel, D. (2001). OntoWeb: The Thematic Network for Semantic Web. AgentLink Newsletter 8:11-13.

2000

• Ding, Y., Chowdhury, G., Foo, S. and Qian, W. (2000). Bibliometric Information Retrieval System (BIRS): A Web Search Interface Utilizing Bibliometric Research Results. Journal of the American Society for Information Science, 51(13): 1190-1204.
• Ding, Y.,Chowdhury, G. and Foo, S. (2000). Incorporating the Results of Co-word Analyses to Increase Search Variety for Information Retrieval. Journal of Information Science, 26(6): 429-452.
• Ding, Y., Chowdhury, G. and Foo, S. (2000). Journal as Markers of Intellectual Space: Journal Co-citation Analysis of Information Retrieval Area, 1987-1997. Scientometrics, 47(1): 55-73.
• Ding, Y., Chowdhury, G. and Foo, S. (2000). Organising Keywords in a Web Search Environment: A Methodology Based on Co-word Analysis. In: C. Beghtol, L. Howarth and N. Williamson (eds.): Dynamism and stability in knowledge organization - Proceedings of the Sixth International ISKO Conference, Ergon Verlag page: 28-34, 10-13 July, 2000. Toronto, Canada.

1999

• Ding, Y., Chowdhury, G. and Foo, S. (1999). Mapping Intellectual Structure of Information Retrieval: An Author Cocitation Analysis, 1987-1997 Journal of Information Science, 25(1): 67-78.
• Ding, Y., Chowdhury, G. and Foo, S. (1999). Mapping the Development in Information Retrieval Specialty: A Bibliometric Analysis via Journals. In. C. Macias-Chapula (ed). Seventh Conference of the International Society for Scientometrics and Informetrics-Proceedings 1999, page:139-149, Mexio, July 5-9, 1999.
• Ding, Y., Chowdhury, G. and Foo, S. (1999). Template Mining for the Extraction of Citation from Digital Documents. In Proceedings of the Second Asian Digital Library Conference (Taiwan) page: 47-62, Nov 8-9, 1999

1998

• Ding, Y. (1998). Visualization of Intellectual Structure in Information Retrieval: Author Cocitation Analysis. International Forum on Information and Documentation, 23(1): 25-36.
• Ding, Y. (1998). Scholarly Communication and Bibliometrics: I. Scholarly Communication Model - Literature Review. International Forum on Information and Documentation, 23(2): 20-29.
• Ding, Y. (1998). Scholarly Communication and Bibliometrics: II. Scholarly Communication Process (Literature Review). International Forum on Information and Documentation, 23(3): 3-19.
• Ding, Y., Foo, S. and Chowdhury, G. (1998). A Bibliometric Analysis of Collaboration in the Field of Information Retrieval. International Information & Library Review, 30(4): 367-376.

Recent Books

• Ding, Y., Rousseau, R., & Wolfram, D. (Eds.) (2014). Measuring scholarly impact: Methods and practice. Springer. (Amazon Link, book website)
• Chen, B., Wang, H., Ding, Y., & Wild, D.(2014). Semantic breakthrough in drug discovery. Semantic Web Synthesis, Morgan&Claypool Publisher. (Amazon Link)
• Kim, W., Ding, Y., & Kim, H. G. (Eds.) (2013). Semantic Web: Proceedings of the 3rd Joint International Semantic Technology Conference (JIST). Lecture Notes in Computer Science 8388, Springer
• Jatowt, A., Lim, E.P., Ding, Y., Miura, A., Tezuka, T., Dias, G., Tanaka, K., Flanagin, A. J., & Dai, B. T. (Eds.) (2013). Social Informatics: Proceedings of the 5th International Conference (SocInfo 2013), Lecture Notes in Computer Science 8238, Springer, ISBN 978-3-319-03259-7
• Borner, K., Conlon, M., Corson-Rikert, J., & Ding, Y. (eds) (2012). VIVO: A Semantic Approach to Scholarly Networking and Discovery. Synthesis Lectures on the Semantic Web: Theory and Technology. Morgan & Claypool Publisher.